SNP Report
Basic Infomation
| Name | rs3898904 dbSNP |
|---|---|
| Location | chr:11,61880743 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 48)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230910 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230915 | 0.98[ASN][1000 genomes] |
| rs11602251 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11602735 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11603572 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11606529 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11606620 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11607072 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11607083 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11607464 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12361901 | 0.98[ASN][1000 genomes] |
| rs12787787 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12806036 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12808841 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2000957 | 0.83[EUR][1000 genomes] |
| rs2000958 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2868724 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2868768 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34283369 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35029162 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35609425 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3853615 | 1.00[ASN][1000 genomes] |
| rs3862389 | 1.00[ASN][1000 genomes] |
| rs3862390 | 1.00[ASN][1000 genomes] |
| rs3898903 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3972405 | 0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4144906 | 0.98[ASN][1000 genomes] |
| rs4963285 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4963286 | 0.83[EUR][1000 genomes] |
| rs4963459 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4963460 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4963461 | 0.83[EUR][1000 genomes] |
| rs4963462 | 0.83[EUR][1000 genomes] |
| rs56275805 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59027603 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs60039451 | 0.86[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs61895508 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7102807 | 1.00[ASN][1000 genomes] |
| rs7122395 | 0.98[ASN][1000 genomes] |
| rs7924462 | 1.00[ASN][1000 genomes] |
| rs7924531 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7924786 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7924923 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7930687 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7934431 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7935766 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7945278 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7946226 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| INCENP | Distal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014