SNP Report

Basic Infomation

Name	rs3890102 dbSNP
Location	chr:11,61915823
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 56)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1047739	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230910	0.89[JPT][hapmap]
rs11230914	0.86[JPT][hapmap]
rs11230917	0.89[JPT][hapmap]
rs11230928	0.82[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap]
rs11230935	0.81[JPT][hapmap];0.84[YRI][hapmap]
rs11494174	0.81[ASN][1000 genomes]
rs11602735	0.89[JPT][hapmap]
rs11603737	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs11606620	0.86[JPT][hapmap]
rs12800538	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs1675061	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1675062	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1675063	0.81[JPT][hapmap]
rs1675088	0.82[CHB][hapmap]
rs1675108	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1675128	0.89[JPT][hapmap]
rs1675129	0.89[JPT][hapmap]
rs1675131	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1675133	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1792936	0.81[JPT][hapmap]
rs1792942	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1792944	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1792946	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1792948	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1792949	0.89[JPT][hapmap]
rs2232931	0.85[CEU][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2232936	0.82[EUR][1000 genomes]
rs2232941	0.84[CEU][hapmap]
rs2277283	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[ASN][1000 genomes]
rs2511347	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs3781965	0.84[CEU][hapmap]
rs3825033	0.81[EUR][1000 genomes]
rs3825035	0.97[ASN][1000 genomes]
rs3862389	0.89[JPT][hapmap]
rs3867137	0.89[JPT][hapmap]
rs3867138	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4144906	0.89[JPT][hapmap]
rs4963289	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4963459	0.89[JPT][hapmap]
rs4963460	0.89[JPT][hapmap]
rs4963462	0.89[JPT][hapmap]
rs4963471	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4963483	0.83[CEU][hapmap]
rs61893702	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7102807	0.89[JPT][hapmap]
rs7122395	0.89[JPT][hapmap]
rs7129085	0.82[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap]
rs7924786	0.86[JPT][hapmap]
rs7924923	0.89[JPT][hapmap]
rs7928360	0.82[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap]
rs7930687	0.89[JPT][hapmap]
rs7935766	0.89[JPT][hapmap]
rs7940224	0.83[EUR][1000 genomes]
rs7951859	0.84[CEU][hapmap]
rs922138	0.82[CHB][hapmap];0.81[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
INCENP	Proximal transcriptional regulation
INCENP	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 6)

eQTL related gene	Source
C20orf74	SCAN
INCENP	Pritchard
INCENP	Pritchard
STIP1	SCAN
SLC22A6	SCAN
PCNXL3	SCAN