SNP Report
Basic Infomation
| Name | rs2232931 dbSNP |
|---|---|
| Location | chr:11,61957070 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1047739 | 0.82[EUR][1000 genomes] |
| rs10897237 | 0.86[CHB][hapmap] |
| rs12800538 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1729377 | 0.86[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs1792902 | 0.86[CHB][hapmap];0.82[CHD][hapmap] |
| rs2232936 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2232941 | 0.90[CEU][hapmap];0.93[CHB][hapmap];0.82[CHD][hapmap];0.93[JPT][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3781965 | 0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3781966 | 0.93[CHB][hapmap];0.81[JPT][hapmap] |
| rs3825033 | 0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3890102 | 0.85[CEU][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs3900954 | 0.86[CHB][hapmap];0.82[CHD][hapmap];0.80[ASN][1000 genomes] |
| rs4963289 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4963471 | 1.00[CEU][hapmap];0.93[GIH][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4963483 | 0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs61893702 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7932927 | 0.93[CHB][hapmap];0.81[JPT][hapmap] |
| rs7938597 | 0.85[CHB][hapmap] |
| rs7940224 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7951859 | 0.90[CEU][hapmap];0.93[CHB][hapmap];0.82[CHD][hapmap];0.93[JPT][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SCGB1D1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014