SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897237	0.81[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1729377	0.81[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1792902	0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2232931	0.85[CHB][hapmap]
rs2232935	0.90[ASN][1000 genomes]
rs2232941	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs3781965	0.86[CHB][hapmap]
rs3781966	0.93[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs3900954	0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3908344	0.80[CHB][hapmap]
rs4963483	0.84[CHB][hapmap]
rs7932927	0.93[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs7951859	0.92[CHB][hapmap];0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SCGB2A1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)