SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 18)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11230972	0.81[EUR][1000 genomes]
rs12800538	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs1792902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2232931	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs2232935	0.81[EUR][1000 genomes]
rs2232936	0.82[ASN][1000 genomes]
rs2232941	0.93[CHB][hapmap]
rs3781965	0.93[CHB][hapmap];0.84[ASN][1000 genomes]
rs3781966	0.93[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs3825033	0.82[ASN][1000 genomes]
rs3900954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3908344	0.81[CHB][hapmap]
rs4963483	0.92[CHB][hapmap];0.93[ASN][1000 genomes]
rs7932927	0.80[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs7938597	0.81[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7940224	0.82[ASN][1000 genomes]
rs7951859	0.93[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
SCGB2A1	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)