SNP Report
Basic Infomation
| Name | rs2232935 dbSNP |
|---|---|
| Location | chr:11,61957533 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897219 | 0.86[EUR][1000 genomes] |
| rs10897237 | 0.81[EUR][1000 genomes] |
| rs11230925 | 0.86[EUR][1000 genomes] |
| rs11230927 | 0.86[EUR][1000 genomes] |
| rs11230928 | 0.86[EUR][1000 genomes] |
| rs11230929 | 0.85[EUR][1000 genomes] |
| rs11230931 | 0.85[EUR][1000 genomes] |
| rs11230935 | 0.86[EUR][1000 genomes] |
| rs11230939 | 0.87[EUR][1000 genomes] |
| rs11230951 | 1.00[JPT][hapmap] |
| rs11230955 | 1.00[JPT][hapmap] |
| rs11230972 | 0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11230973 | 1.00[JPT][hapmap] |
| rs11494173 | 0.86[EUR][1000 genomes] |
| rs11494174 | 0.86[EUR][1000 genomes] |
| rs11603737 | 0.84[EUR][1000 genomes] |
| rs1675088 | 0.87[EUR][1000 genomes] |
| rs1675108 | 0.85[EUR][1000 genomes] |
| rs1675109 | 0.85[EUR][1000 genomes] |
| rs1729377 | 0.81[EUR][1000 genomes] |
| rs1792879 | 0.85[EUR][1000 genomes] |
| rs1792902 | 0.81[EUR][1000 genomes] |
| rs1792930 | 0.84[EUR][1000 genomes] |
| rs2232937 | 1.00[JPT][hapmap] |
| rs2232941 | 0.92[ASN][1000 genomes] |
| rs2511347 | 0.85[EUR][1000 genomes] |
| rs3781966 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3845255 | 0.86[EUR][1000 genomes] |
| rs3900954 | 0.83[EUR][1000 genomes] |
| rs7113156 | 0.85[EUR][1000 genomes] |
| rs7129085 | 0.84[EUR][1000 genomes] |
| rs7928360 | 0.86[EUR][1000 genomes] |
| rs7932927 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7938597 | 0.90[ASN][1000 genomes] |
| rs7946207 | 0.84[EUR][1000 genomes] |
| rs7951859 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SCGB1D1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014