SNP Report

Basic Infomation

Name	rs1675109 dbSNP
Location	chr:11,61918133
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 48)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897219	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230925	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230927	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230928	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230929	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230931	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230935	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230939	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11494173	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11494174	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11603737	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1627693	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1675061	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1675062	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1675063	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1675088	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1675108	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675130	0.95[ASN][1000 genomes]
rs1675131	0.95[ASN][1000 genomes]
rs1675132	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1675133	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1792879	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792930	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792934	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1792936	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1792937	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1792939	0.98[ASN][1000 genomes]
rs1792940	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1792941	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1792942	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1792943	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1792944	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1792945	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1792946	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1792948	0.87[ASN][1000 genomes]
rs2232935	0.85[EUR][1000 genomes]
rs2250661	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2446743	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2511347	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781966	0.85[EUR][1000 genomes]
rs3845255	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113156	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129085	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928360	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932927	0.84[EUR][1000 genomes]
rs7946207	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs922138	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs922139	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
INCENP	Proximal transcriptional regulation
INCENP	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)