SNP Report
Basic Infomation
| Name | rs1792942 dbSNP |
|---|---|
| Location | chr:11,61898561 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 52)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897219 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11230925 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11230927 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11230928 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11230929 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11230931 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11230935 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11230939 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11494173 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11494174 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11603737 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1627693 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1675061 | 0.87[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1675062 | 0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1675063 | 0.87[ASW][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1675088 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes] |
| rs1675108 | 0.81[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1675109 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1675128 | 0.82[CHD][hapmap];0.89[MEX][hapmap] |
| rs1675129 | 0.89[MEX][hapmap] |
| rs1675130 | 0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1675131 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1675132 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1675133 | 1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792879 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1792902 | 0.95[MEX][hapmap] |
| rs1792930 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1792934 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792936 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792937 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792939 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792940 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1792941 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792943 | 1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792944 | 0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792945 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792946 | 0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792948 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2250661 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2277283 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs2446743 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2511347 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3845255 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3890102 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs3900954 | 0.95[MEX][hapmap] |
| rs4963471 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs7113156 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7129085 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7928360 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7946207 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs922138 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs922139 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014