SNP Report

Basic Infomation

Name	rs1792948 dbSNP
Location	chr:11,61895169
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 78)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897219	0.87[ASN][1000 genomes]
rs11230910	0.89[JPT][hapmap]
rs11230914	0.86[JPT][hapmap]
rs11230916	0.83[TSI][hapmap]
rs11230917	0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs11230925	0.87[ASN][1000 genomes]
rs11230927	0.87[ASN][1000 genomes]
rs11230928	1.00[CHB][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap];0.87[ASN][1000 genomes]
rs11230929	0.87[ASN][1000 genomes]
rs11230931	0.87[ASN][1000 genomes]
rs11230935	1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs11230939	0.87[ASN][1000 genomes]
rs11494173	0.87[ASN][1000 genomes]
rs11494174	0.82[ASN][1000 genomes]
rs11602735	0.89[JPT][hapmap]
rs11603737	1.00[CHB][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap];0.87[ASN][1000 genomes]
rs11606620	0.86[JPT][hapmap]
rs1627693	0.89[ASN][1000 genomes]
rs1630011	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1675061	1.00[CHB][hapmap];0.94[CHD][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1675062	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1675063	0.85[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1675088	1.00[CHB][hapmap]
rs1675108	1.00[CHB][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.87[ASN][1000 genomes]
rs1675109	0.87[ASN][1000 genomes]
rs1675128	0.82[CHD][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1675129	0.94[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1675130	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1675131	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1675132	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1675133	1.00[CHB][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1792879	0.87[ASN][1000 genomes]
rs1792902	0.90[MEX][hapmap]
rs1792930	0.87[ASN][1000 genomes]
rs1792934	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1792936	0.85[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1792937	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1792939	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1792940	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1792941	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1792942	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1792943	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1792944	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1792945	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1792946	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1792949	0.88[CEU][hapmap];0.89[JPT][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1792950	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1792951	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1792952	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2250661	0.89[ASN][1000 genomes]
rs2277283	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2446743	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2511347	1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs3758967	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3845255	0.87[ASN][1000 genomes]
rs3862389	0.89[JPT][hapmap];0.84[TSI][hapmap]
rs3867137	0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs3890102	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3900954	0.90[MEX][hapmap]
rs4144906	0.89[JPT][hapmap]
rs4963459	0.89[JPT][hapmap]
rs4963460	0.89[JPT][hapmap]
rs4963462	0.89[JPT][hapmap]
rs4963471	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7102807	0.89[JPT][hapmap];0.84[TSI][hapmap]
rs7113156	0.87[ASN][1000 genomes]
rs7122395	0.89[JPT][hapmap];0.84[TSI][hapmap]
rs7129085	1.00[CHB][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap];0.87[ASN][1000 genomes]
rs7924786	0.86[JPT][hapmap]
rs7924923	0.89[JPT][hapmap]
rs7927359	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7928360	1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs7930687	0.89[JPT][hapmap]
rs7935766	0.89[JPT][hapmap]
rs7946207	0.87[ASN][1000 genomes]
rs7952545	0.80[EUR][1000 genomes]
rs922138	1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs922139	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
INCENP	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
SLC22A6	SCAN
PLAC1L	SCAN
FADS2	SCAN
KCNK4	SCAN