SNP Report
Basic Infomation
| Name | rs1792902 dbSNP |
|---|---|
| Location | chr:11,61975755 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897237 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230928 | 0.90[MEX][hapmap] |
| rs11230972 | 0.81[EUR][1000 genomes] |
| rs11603737 | 0.90[MEX][hapmap] |
| rs12800538 | 0.85[CHB][hapmap] |
| rs1675061 | 0.95[MEX][hapmap] |
| rs1675062 | 0.95[MEX][hapmap] |
| rs1675063 | 0.95[MEX][hapmap] |
| rs1675108 | 0.95[MEX][hapmap] |
| rs1675128 | 0.85[MEX][hapmap] |
| rs1675129 | 0.85[MEX][hapmap] |
| rs1675131 | 0.95[MEX][hapmap] |
| rs1729377 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1792942 | 0.95[MEX][hapmap] |
| rs1792944 | 0.89[MEX][hapmap] |
| rs1792946 | 0.95[MEX][hapmap] |
| rs1792948 | 0.90[MEX][hapmap] |
| rs2232931 | 0.86[CHB][hapmap];0.82[CHD][hapmap] |
| rs2232935 | 0.81[EUR][1000 genomes] |
| rs2232941 | 0.93[CHB][hapmap] |
| rs3781965 | 0.93[CHB][hapmap] |
| rs3781966 | 0.93[CHB][hapmap];0.80[CHD][hapmap];0.87[JPT][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs3900954 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3908344 | 0.81[CHB][hapmap] |
| rs4963483 | 0.92[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs7129085 | 0.90[MEX][hapmap] |
| rs7932927 | 0.80[CEU][hapmap];0.93[CHB][hapmap];0.80[CHD][hapmap];0.87[JPT][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs7938597 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7951859 | 0.93[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SCGB2A1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 11)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014