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rVarBase
SNP Report
Basic Infomation
Name
rs1047739  
dbSNP
Location
chr:11,61919693
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11494174
0.81[ASN][1000 genomes]
rs12800538
0.83[EUR][1000 genomes]
rs2232931
0.82[EUR][1000 genomes]
rs2232936
0.82[EUR][1000 genomes]
rs2277283
0.97[ASN][1000 genomes]
rs3825033
0.81[EUR][1000 genomes]
rs3825035
0.97[ASN][1000 genomes]
rs3867138
0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3890102
0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963289
0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4963471
0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61893702
0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7940224
0.83[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
INCENP
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
INCENP
Pritchard