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rVarBase
SNP Report
Basic Infomation
Name
rs11230920  
dbSNP
Location
chr:11,61900987
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1047738
0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10897215
1.00[YRI][hapmap]
rs11230906
1.00[YRI][hapmap]
rs11230918
1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11230951
1.00[CHB][hapmap]
rs11230955
1.00[CHB][hapmap]
rs11230971
0.82[ASN][1000 genomes]
rs11230973
1.00[CHB][hapmap]
rs12362624
0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17636205
1.00[YRI][hapmap]
rs2232937
1.00[CHB][hapmap]
rs2232944
1.00[YRI][hapmap]
rs55645185
0.82[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
INCENP
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)