SNP Report
Basic Infomation
| Name | rs1628151 dbSNP |
|---|---|
| Location | chr:1,201289175 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 51)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1046962 | 0.83[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs1046970 | 0.83[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs1122481 | 0.83[CEU][hapmap];0.83[TSI][hapmap] |
| rs12120625 | 0.83[EUR][1000 genomes] |
| rs1539692 | 0.83[CEU][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs1543805 | 0.94[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs1543806 | 0.94[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs1626370 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1628556 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.81[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1722742 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1722764 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1722765 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17425876 | 0.83[CEU][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs1772828 | 0.94[ASN][1000 genomes] |
| rs1772832 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1772836 | 0.94[CHB][hapmap];0.93[JPT][hapmap] |
| rs1772847 | 0.83[CEU][hapmap];0.90[GIH][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1772848 | 0.81[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1772849 | 0.94[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1772853 | 0.82[ASN][1000 genomes] |
| rs1772855 | 0.82[ASN][1000 genomes] |
| rs1772858 | 0.94[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1772860 | 0.82[ASN][1000 genomes] |
| rs1779283 | 0.82[ASN][1000 genomes] |
| rs1779284 | 0.81[ASN][1000 genomes] |
| rs1779289 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1779293 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1794862 | 0.94[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2071960 | 0.94[ASN][1000 genomes] |
| rs2239845 | 0.93[ASN][1000 genomes] |
| rs2268164 | 0.81[ASN][1000 genomes] |
| rs2365649 | 0.82[CEU][hapmap] |
| rs3767518 | 0.82[ASN][1000 genomes] |
| rs3819796 | 0.89[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap] |
| rs4915516 | 0.82[CEU][hapmap] |
| rs4915517 | 0.83[CEU][hapmap];0.83[TSI][hapmap] |
| rs832145 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs832146 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs832147 | 0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs832148 | 0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs832149 | 0.87[EUR][1000 genomes] |
| rs832150 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs832151 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs832152 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs832169 | 0.95[GIH][hapmap] |
| rs832170 | 0.95[GIH][hapmap] |
| rs854502 | 0.89[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap] |
| rs854505 | 0.89[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs854507 | 0.82[ASN][1000 genomes] |
| rs854508 | 0.89[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs854509 | 0.83[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PKP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014