SNP Report
Name | rs1046962   dbSNP |
---|---|
Location | chr:1,201301873 |
Allele | A/G/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1046970 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10800775 | 0.84[TSI][hapmap] |
rs1122481 | 1.00[CEU][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes] |
rs12120625 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs12409010 | 0.88[CEU][hapmap];0.84[TSI][hapmap] |
rs1539692 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1539694 | 0.82[JPT][hapmap] |
rs1626370 | 0.83[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes] |
rs1628151 | 0.83[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes] |
rs1628556 | 0.83[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes] |
rs1722742 | 0.81[CEU][hapmap];0.83[EUR][1000 genomes] |
rs1722764 | 0.83[CEU][hapmap];0.83[EUR][1000 genomes] |
rs17425876 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1772832 | 0.83[EUR][1000 genomes] |
rs1772847 | 1.00[CEU][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes] |
rs1772848 | 0.91[EUR][1000 genomes] |
rs1779289 | 0.83[EUR][1000 genomes] |
rs1779293 | 0.83[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes] |
rs2365649 | 1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes] |
rs3729842 | 0.84[TSI][hapmap] |
rs4915516 | 1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes] |
rs4915517 | 1.00[CEU][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes] |
rs832147 | 0.84[TSI][hapmap] |
rs832148 | 0.84[TSI][hapmap] |
rs832149 | 0.92[EUR][1000 genomes] |
rs832150 | 0.80[EUR][1000 genomes] |
rs832151 | 0.87[CEU][hapmap];0.80[EUR][1000 genomes] |
rs832152 | 0.82[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes] |
rs861272 | 0.81[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
PKP1 | Proximal transcriptional regulation |
PKP1 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014