SNP Report

Basic Infomation

Name	rs1046962 dbSNP
Location	chr:1,201301873
Allele	A/G/T

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1046970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10800775	0.84[TSI][hapmap]
rs1122481	1.00[CEU][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs12120625	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12409010	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs1539692	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1539694	0.82[JPT][hapmap]
rs1626370	0.83[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs1628151	0.83[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs1628556	0.83[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs1722742	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1722764	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs17425876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1772832	0.83[EUR][1000 genomes]
rs1772847	1.00[CEU][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs1772848	0.91[EUR][1000 genomes]
rs1779289	0.83[EUR][1000 genomes]
rs1779293	0.83[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs2365649	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs3729842	0.84[TSI][hapmap]
rs4915516	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs4915517	1.00[CEU][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs832147	0.84[TSI][hapmap]
rs832148	0.84[TSI][hapmap]
rs832149	0.92[EUR][1000 genomes]
rs832150	0.80[EUR][1000 genomes]
rs832151	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs832152	0.82[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs861272	0.81[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PKP1	Proximal transcriptional regulation
PKP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
DPY19L2P1	SCAN
PTPRC	SCAN
HSPC072	SCAN