SNP Report
Name | rs1772848   dbSNP |
---|---|
Location | chr:1,201279054 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1023486 | 0.92[ASN][1000 genomes] |
rs1046962 | 0.91[EUR][1000 genomes] |
rs1046970 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1122481 | 0.87[EUR][1000 genomes] |
rs12120625 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1539692 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1626370 | 0.92[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs1628151 | 0.81[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs1628556 | 0.92[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs1722742 | 0.85[EUR][1000 genomes] |
rs1722764 | 0.86[EUR][1000 genomes] |
rs1722765 | 0.87[EUR][1000 genomes] |
rs17425876 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1772832 | 0.91[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs1772847 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1779289 | 0.85[EUR][1000 genomes] |
rs1779293 | 0.92[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs2365649 | 0.87[EUR][1000 genomes] |
rs4915516 | 0.87[EUR][1000 genomes] |
rs4915517 | 0.87[EUR][1000 genomes] |
rs56033712 | 0.90[AFR][1000 genomes] |
rs832149 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs832150 | 0.88[EUR][1000 genomes] |
rs832151 | 0.88[EUR][1000 genomes] |
rs832152 | 0.92[AFR][1000 genomes];0.88[EUR][1000 genomes] |
rs861272 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PKP1 | Distal transcriptional regulation |
TNNT2 | Distal transcriptional regulation |
LAD1 | Distal transcriptional regulation |
CSRP1 | Distal transcriptional regulation |
ENSG00000224536 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014