SNP Report
Basic Infomation
| Name | rs1772848 dbSNP |
|---|---|
| Location | chr:1,201279054 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1023486 | 0.92[ASN][1000 genomes] |
| rs1046962 | 0.91[EUR][1000 genomes] |
| rs1046970 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1122481 | 0.87[EUR][1000 genomes] |
| rs12120625 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1539692 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1626370 | 0.92[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1628151 | 0.81[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1628556 | 0.92[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1722742 | 0.85[EUR][1000 genomes] |
| rs1722764 | 0.86[EUR][1000 genomes] |
| rs1722765 | 0.87[EUR][1000 genomes] |
| rs17425876 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1772832 | 0.91[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1772847 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1779289 | 0.85[EUR][1000 genomes] |
| rs1779293 | 0.92[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2365649 | 0.87[EUR][1000 genomes] |
| rs4915516 | 0.87[EUR][1000 genomes] |
| rs4915517 | 0.87[EUR][1000 genomes] |
| rs56033712 | 0.90[AFR][1000 genomes] |
| rs832149 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs832150 | 0.88[EUR][1000 genomes] |
| rs832151 | 0.88[EUR][1000 genomes] |
| rs832152 | 0.92[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs861272 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PKP1 | Distal transcriptional regulation |
| TNNT2 | Distal transcriptional regulation |
| LAD1 | Distal transcriptional regulation |
| CSRP1 | Distal transcriptional regulation |
| ENSG00000224536 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014