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rVarBase
SNP Report
Basic Infomation
Name
rs1023486  
dbSNP
Location
chr:1,201297446
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1543805
0.91[EUR][1000 genomes]
rs1543806
0.91[EUR][1000 genomes]
rs1772828
0.91[EUR][1000 genomes]
rs1772847
0.92[ASN][1000 genomes]
rs1772848
0.92[ASN][1000 genomes]
rs2071960
0.91[EUR][1000 genomes]
rs2239845
0.91[EUR][1000 genomes]
rs832149
0.92[ASN][1000 genomes]
rs861272
0.81[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
PKP1
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)