SNP Report
Name | rs1543805   dbSNP |
---|---|
Location | chr:1,201292794 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1023486 | 0.91[EUR][1000 genomes] |
rs1543806 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1626370 | 0.95[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes] |
rs1628151 | 0.94[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes] |
rs1628556 | 0.95[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes] |
rs1722742 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes] |
rs1722764 | 0.95[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes] |
rs1722765 | 0.88[ASN][1000 genomes] |
rs1772828 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1772832 | 0.93[ASN][1000 genomes] |
rs1772836 | 0.89[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1772849 | 0.89[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes] |
rs1772853 | 0.85[ASN][1000 genomes] |
rs1772855 | 0.85[ASN][1000 genomes] |
rs1772858 | 0.89[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes] |
rs1772860 | 0.85[ASN][1000 genomes] |
rs1779283 | 0.85[ASN][1000 genomes] |
rs1779284 | 0.84[ASN][1000 genomes] |
rs1779289 | 0.93[ASN][1000 genomes] |
rs1779293 | 0.95[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes] |
rs1794862 | 0.89[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes] |
rs2071960 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2239845 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2268163 | 0.82[ASN][1000 genomes] |
rs2268164 | 0.83[ASN][1000 genomes] |
rs3767518 | 0.88[ASN][1000 genomes] |
rs3767519 | 0.84[ASN][1000 genomes] |
rs3819796 | 0.84[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap] |
rs832145 | 0.85[ASN][1000 genomes] |
rs832146 | 0.86[ASN][1000 genomes] |
rs832147 | 0.89[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
rs832148 | 0.89[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes] |
rs832150 | 0.93[ASN][1000 genomes] |
rs832151 | 0.94[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes] |
rs832152 | 0.95[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes] |
rs854502 | 0.84[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap] |
rs854505 | 0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes] |
rs854507 | 0.88[ASN][1000 genomes] |
rs854508 | 0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
rs854509 | 0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PKP1 | Proximal transcriptional regulation |
PKP1 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014