SNP Report
Name | rs854505   dbSNP |
---|---|
Location | chr:1,201293985 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1543805 | 0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1543806 | 0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1619186 | 0.85[ASN][1000 genomes] |
rs1626370 | 0.90[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1628151 | 0.89[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1628556 | 0.90[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1722742 | 0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes] |
rs1722764 | 0.90[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1722765 | 0.82[ASN][1000 genomes] |
rs1772828 | 0.81[ASN][1000 genomes] |
rs1772832 | 0.86[ASN][1000 genomes] |
rs1772836 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs1772849 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
rs1772853 | 0.94[ASN][1000 genomes] |
rs1772855 | 0.94[ASN][1000 genomes] |
rs1772858 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
rs1772860 | 0.94[ASN][1000 genomes] |
rs1779283 | 0.94[ASN][1000 genomes] |
rs1779284 | 0.93[ASN][1000 genomes] |
rs1779289 | 0.86[ASN][1000 genomes] |
rs1779293 | 0.90[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1794862 | 0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs2071960 | 0.81[ASN][1000 genomes] |
rs2239845 | 0.82[ASN][1000 genomes] |
rs2268163 | 0.91[ASN][1000 genomes] |
rs2268164 | 0.92[ASN][1000 genomes] |
rs2284438 | 0.88[ASN][1000 genomes] |
rs2799691 | 0.82[TSI][hapmap] |
rs3767518 | 0.95[ASN][1000 genomes] |
rs3767519 | 0.91[ASN][1000 genomes] |
rs3819796 | 0.89[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
rs3819802 | 0.87[ASN][1000 genomes] |
rs832147 | 0.84[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap] |
rs832148 | 0.84[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap] |
rs832150 | 0.86[ASN][1000 genomes] |
rs832151 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs832152 | 0.90[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
rs854502 | 0.89[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
rs854507 | 0.95[ASN][1000 genomes] |
rs854508 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes] |
rs854509 | 0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PKP1 | Proximal transcriptional regulation |
PKP1 | Distal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
SEC61A1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014