SNP Report

Basic Infomation

Name	rs1722764 dbSNP
Location	chr:1,201283716
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1046962	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs1046970	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs1122481	0.83[CEU][hapmap]
rs12120625	0.83[EUR][1000 genomes]
rs1539692	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs1543805	0.95[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs1543806	0.95[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs1626370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1628151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1628556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1722742	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1722765	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17425876	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs1772828	0.94[ASN][1000 genomes]
rs1772832	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1772836	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1772847	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs1772848	0.86[EUR][1000 genomes]
rs1772849	0.95[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs1772853	0.82[ASN][1000 genomes]
rs1772855	0.82[ASN][1000 genomes]
rs1772858	0.95[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs1772860	0.82[ASN][1000 genomes]
rs1779283	0.82[ASN][1000 genomes]
rs1779284	0.81[ASN][1000 genomes]
rs1779289	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1794862	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2071960	0.94[ASN][1000 genomes]
rs2239845	0.93[ASN][1000 genomes]
rs2268164	0.81[ASN][1000 genomes]
rs2365649	0.83[CEU][hapmap]
rs3767518	0.82[ASN][1000 genomes]
rs3819796	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs4915516	0.83[CEU][hapmap]
rs4915517	0.83[CEU][hapmap]
rs832145	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs832146	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs832147	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs832148	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs832149	0.87[EUR][1000 genomes]
rs832150	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832151	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs832152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs854502	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs854505	0.90[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs854507	0.82[ASN][1000 genomes]
rs854508	0.86[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs854509	0.80[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PKP1	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)