SNP Report
Name | rs1122481   dbSNP |
---|---|
Location | chr:1,201315302 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1046962 | 1.00[CEU][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes] |
rs1046970 | 1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes] |
rs10800775 | 0.89[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes] |
rs12120625 | 0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12409010 | 0.88[CEU][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs1524752 | 0.83[YRI][hapmap] |
rs1539692 | 1.00[CEU][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1539694 | 0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap] |
rs1626370 | 0.83[CEU][hapmap];0.84[TSI][hapmap] |
rs1628151 | 0.83[CEU][hapmap];0.83[TSI][hapmap] |
rs1628556 | 0.83[CEU][hapmap];0.83[TSI][hapmap] |
rs1722742 | 0.81[CEU][hapmap] |
rs1722764 | 0.83[CEU][hapmap] |
rs17425876 | 1.00[CEU][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes] |
rs1772847 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
rs1772848 | 0.87[EUR][1000 genomes] |
rs1779282 | 1.00[YRI][hapmap] |
rs1779293 | 0.83[CEU][hapmap];0.84[TSI][hapmap] |
rs1892025 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs2365649 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3729842 | 0.89[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs4915516 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4915517 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7526201 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs832147 | 0.81[TSI][hapmap] |
rs832148 | 0.81[TSI][hapmap] |
rs832149 | 0.87[EUR][1000 genomes] |
rs832151 | 0.87[CEU][hapmap] |
rs832152 | 0.82[CEU][hapmap];0.84[TSI][hapmap] |
Symbol | Regulation type |
---|---|
TNNT2 | Distal transcriptional regulation |
PKP1 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014