SNP Report

Basic Infomation

Name	rs1122481 dbSNP
Location	chr:1,201315302
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1046962	1.00[CEU][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs1046970	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes]
rs10800775	0.89[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes]
rs12120625	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12409010	0.88[CEU][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1524752	0.83[YRI][hapmap]
rs1539692	1.00[CEU][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1539694	0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs1626370	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs1628151	0.83[CEU][hapmap];0.83[TSI][hapmap]
rs1628556	0.83[CEU][hapmap];0.83[TSI][hapmap]
rs1722742	0.81[CEU][hapmap]
rs1722764	0.83[CEU][hapmap]
rs17425876	1.00[CEU][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs1772847	1.00[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs1772848	0.87[EUR][1000 genomes]
rs1779282	1.00[YRI][hapmap]
rs1779293	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs1892025	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2365649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3729842	0.89[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4915516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4915517	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7526201	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs832147	0.81[TSI][hapmap]
rs832148	0.81[TSI][hapmap]
rs832149	0.87[EUR][1000 genomes]
rs832151	0.87[CEU][hapmap]
rs832152	0.82[CEU][hapmap];0.84[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
TNNT2	Distal transcriptional regulation
PKP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
NDUFB11	SCAN
PTPRC	SCAN
HSPC072	SCAN