SNP Report
Name | rs1539694   dbSNP |
---|---|
Location | chr:1,201316482 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1046962 | 0.82[JPT][hapmap] |
rs1046970 | 0.82[JPT][hapmap] |
rs1122481 | 0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap] |
rs12120623 | 0.81[EUR][1000 genomes] |
rs12126907 | 1.00[CEU][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs12409010 | 0.80[JPT][hapmap] |
rs1539692 | 0.81[CHD][hapmap];0.82[JPT][hapmap] |
rs17425876 | 0.82[JPT][hapmap] |
rs2153715 | 1.00[CEU][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2365649 | 0.92[CHB][hapmap];1.00[JPT][hapmap] |
rs4915515 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs4915516 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
rs4915518 | 0.93[TSI][hapmap];0.82[EUR][1000 genomes] |
rs4915519 | 1.00[CEU][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7526201 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
PKP1 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014