SNP Report
Basic Infomation
| Name | rs1539694 dbSNP |
|---|---|
| Location | chr:1,201316482 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1046962 | 0.82[JPT][hapmap] |
| rs1046970 | 0.82[JPT][hapmap] |
| rs1122481 | 0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap] |
| rs12120623 | 0.81[EUR][1000 genomes] |
| rs12126907 | 1.00[CEU][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12409010 | 0.80[JPT][hapmap] |
| rs1539692 | 0.81[CHD][hapmap];0.82[JPT][hapmap] |
| rs17425876 | 0.82[JPT][hapmap] |
| rs2153715 | 1.00[CEU][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2365649 | 0.92[CHB][hapmap];1.00[JPT][hapmap] |
| rs4915515 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4915516 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
| rs4915518 | 0.93[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs4915519 | 1.00[CEU][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7526201 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PKP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014