SNP Report

Basic Infomation

Name	rs4915516 dbSNP
Location	chr:1,201310306
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1046962	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1046970	1.00[CEU][hapmap];0.84[YRI][hapmap];0.93[EUR][1000 genomes]
rs10800775	0.84[AMR][1000 genomes]
rs1122481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12120625	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12409010	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1524752	0.82[YRI][hapmap]
rs1539692	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1539694	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1626370	0.82[CEU][hapmap]
rs1628151	0.82[CEU][hapmap]
rs1628556	0.82[CEU][hapmap]
rs1722742	0.81[CEU][hapmap]
rs1722764	0.83[CEU][hapmap]
rs17425876	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1772847	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1772848	0.87[EUR][1000 genomes]
rs1779282	1.00[YRI][hapmap]
rs1779293	0.82[CEU][hapmap]
rs1892025	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2365649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3729842	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4915517	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7526201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs832149	0.87[EUR][1000 genomes]
rs832151	0.87[CEU][hapmap]
rs832152	0.81[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
PKP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)