SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 9)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1046962	0.84[TSI][hapmap]
rs10800775	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1122481	0.89[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12409010	0.88[CEU][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1539692	0.87[TSI][hapmap]
rs1892025	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2365649	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4915516	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4915517	0.89[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
TNNT2	Proximal transcriptional regulation
TNNT2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)