SNP Report
Basic Infomation
| Name | rs4915517 dbSNP |
|---|---|
| Location | chr:1,201310733 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1046962 | 1.00[CEU][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs1046970 | 1.00[CEU][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes] |
| rs10800775 | 0.89[MEX][hapmap];0.87[TSI][hapmap] |
| rs1122481 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12120625 | 0.95[EUR][1000 genomes] |
| rs12409010 | 0.88[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1524752 | 0.83[YRI][hapmap] |
| rs1539692 | 1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs1626370 | 0.83[CEU][hapmap];0.84[TSI][hapmap] |
| rs1628151 | 0.83[CEU][hapmap];0.83[TSI][hapmap] |
| rs1628556 | 0.83[CEU][hapmap];0.83[TSI][hapmap] |
| rs1722742 | 0.81[CEU][hapmap] |
| rs1722764 | 0.83[CEU][hapmap] |
| rs17425876 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs1772847 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs1772848 | 0.87[EUR][1000 genomes] |
| rs1779282 | 1.00[YRI][hapmap] |
| rs1779293 | 0.83[CEU][hapmap];0.84[TSI][hapmap] |
| rs1892025 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2365649 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3729842 | 0.89[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4915516 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs832147 | 0.81[TSI][hapmap] |
| rs832148 | 0.81[TSI][hapmap] |
| rs832149 | 0.87[EUR][1000 genomes] |
| rs832151 | 0.87[CEU][hapmap] |
| rs832152 | 0.82[CEU][hapmap];0.84[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PKP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014