SNP Report

Basic Infomation

Name	rs832147 dbSNP
Location	chr:1,201269687
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 40)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1046962	0.84[TSI][hapmap]
rs1122481	0.81[TSI][hapmap]
rs1539692	0.81[TSI][hapmap]
rs1543805	0.89[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs1543806	0.89[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs1619186	0.81[ASN][1000 genomes]
rs1626370	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1628151	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1628556	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1722742	0.94[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1722764	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1722765	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1772828	0.87[ASN][1000 genomes]
rs1772832	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1772836	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs1772847	0.90[GIH][hapmap];0.90[TSI][hapmap]
rs1772849	0.89[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap]
rs1772858	0.89[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap]
rs1779289	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1779293	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1794862	0.89[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap]
rs2071960	0.87[ASN][1000 genomes]
rs2239845	0.86[ASN][1000 genomes]
rs2284438	0.82[ASN][1000 genomes]
rs3819796	0.95[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs3819802	0.83[ASN][1000 genomes]
rs4915517	0.81[TSI][hapmap]
rs832145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs832146	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs832150	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs832151	0.94[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes]
rs832152	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs832169	0.95[GIH][hapmap]
rs832170	0.95[GIH][hapmap]
rs854502	0.95[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs854505	0.84[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap]
rs854508	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs854509	0.87[JPT][hapmap]
rs861272	0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
LAD1	Distal transcriptional regulation
PHLDA3	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
CRELD2	SCAN
IGFN1	SCAN
PTPRC	SCAN