SNP Report
Basic Infomation
| Name | rs832170 dbSNP |
|---|---|
| Location | chr:1,201257016 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1539692 | 0.80[MEX][hapmap] |
| rs1626370 | 0.95[GIH][hapmap] |
| rs1628151 | 0.95[GIH][hapmap] |
| rs1628556 | 1.00[GIH][hapmap] |
| rs17425876 | 0.80[MEX][hapmap] |
| rs17576470 | 1.00[LWK][hapmap] |
| rs1772847 | 0.95[GIH][hapmap];0.80[MEX][hapmap] |
| rs1779293 | 0.95[GIH][hapmap] |
| rs2365649 | 0.82[CEU][hapmap] |
| rs4915219 | 1.00[LWK][hapmap] |
| rs56252940 | 0.80[ASN][1000 genomes] |
| rs832147 | 0.95[GIH][hapmap] |
| rs832148 | 0.95[GIH][hapmap] |
| rs832152 | 0.95[GIH][hapmap] |
| rs832165 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs832166 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs832167 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs832169 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LAD1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CFHR4 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014