SNP Report
Basic Infomation
| Name | rs17425876 dbSNP |
|---|---|
| Location | chr:1,201301053 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1046962 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1046970 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1122481 | 1.00[CEU][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs12120625 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12409010 | 0.88[CEU][hapmap] |
| rs1539692 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1539694 | 0.82[JPT][hapmap] |
| rs1626370 | 0.83[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs1628151 | 0.83[CEU][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs1628556 | 0.83[CEU][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs1722742 | 0.81[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs1722764 | 0.83[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs1772832 | 0.83[EUR][1000 genomes] |
| rs1772847 | 1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1772848 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1779289 | 0.83[EUR][1000 genomes] |
| rs1779293 | 0.83[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs2365649 | 1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes] |
| rs4915516 | 1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes] |
| rs4915517 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs832149 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs832150 | 0.80[EUR][1000 genomes] |
| rs832151 | 0.87[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs832152 | 0.82[CEU][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs832169 | 0.80[MEX][hapmap] |
| rs832170 | 0.80[MEX][hapmap] |
| rs861272 | 0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PKP1 | Proximal transcriptional regulation |
| PKP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014