SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1046962	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1046970	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1122481	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12409010	0.81[EUR][1000 genomes]
rs1539692	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626370	0.83[EUR][1000 genomes]
rs1628151	0.83[EUR][1000 genomes]
rs1628556	0.83[EUR][1000 genomes]
rs1722742	0.83[EUR][1000 genomes]
rs1722764	0.83[EUR][1000 genomes]
rs17425876	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1772832	0.83[EUR][1000 genomes]
rs1772847	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1772848	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1779289	0.83[EUR][1000 genomes]
rs1779293	0.83[EUR][1000 genomes]
rs2365649	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4915516	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4915517	0.95[EUR][1000 genomes]
rs7526201	0.82[ASN][1000 genomes]
rs832149	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs832150	0.80[EUR][1000 genomes]
rs832151	0.80[EUR][1000 genomes]
rs832152	0.80[EUR][1000 genomes]
rs861272	0.81[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PKP1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)