SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1122481	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12120623	0.81[EUR][1000 genomes]
rs12120625	0.82[ASN][1000 genomes]
rs12126907	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1539692	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs1539694	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2153715	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2365649	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4915515	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4915516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4915518	0.82[EUR][1000 genomes]
rs4915519	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PKP1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)