SNP Report
Name | rs12409010   dbSNP |
---|---|
Location | chr:1,201322878 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1046962 | 0.88[CEU][hapmap];0.84[TSI][hapmap] |
rs1046970 | 0.88[CEU][hapmap] |
rs10800775 | 0.88[CEU][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs1122481 | 0.88[CEU][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs12120625 | 0.81[EUR][1000 genomes] |
rs1539692 | 0.88[CEU][hapmap];1.00[LWK][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes] |
rs1539694 | 0.80[JPT][hapmap] |
rs17425876 | 0.88[CEU][hapmap] |
rs1772847 | 0.88[CEU][hapmap] |
rs1892025 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2365649 | 0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs3729842 | 0.88[CEU][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs4915516 | 0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4915517 | 0.88[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
TNNT2 | Distal transcriptional regulation |
ASCL5 | Distal transcriptional regulation |
PKP1 | Distal transcriptional regulation |
LAD1 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014