SNP Report
Basic Infomation
| Name | rs12409010 dbSNP |
|---|---|
| Location | chr:1,201322878 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1046962 | 0.88[CEU][hapmap];0.84[TSI][hapmap] |
| rs1046970 | 0.88[CEU][hapmap] |
| rs10800775 | 0.88[CEU][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1122481 | 0.88[CEU][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12120625 | 0.81[EUR][1000 genomes] |
| rs1539692 | 0.88[CEU][hapmap];1.00[LWK][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs1539694 | 0.80[JPT][hapmap] |
| rs17425876 | 0.88[CEU][hapmap] |
| rs1772847 | 0.88[CEU][hapmap] |
| rs1892025 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2365649 | 0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3729842 | 0.88[CEU][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4915516 | 0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4915517 | 0.88[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNT2 | Distal transcriptional regulation |
| ASCL5 | Distal transcriptional regulation |
| PKP1 | Distal transcriptional regulation |
| LAD1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014