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rVarBase
SNP Report
Basic Infomation
Name
rs861272  
dbSNP
Location
chr:1,201269122
Allele
A/C
LD-proxy of rSNPs(r
2
>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1023486
0.81[ASN][1000 genomes]
rs1046962
0.81[EUR][1000 genomes]
rs1046970
0.81[EUR][1000 genomes]
rs12120625
0.81[EUR][1000 genomes]
rs1539692
0.81[EUR][1000 genomes]
rs1722765
0.80[EUR][1000 genomes]
rs17425876
0.81[EUR][1000 genomes]
rs1772847
0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1772848
0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs832145
0.87[EUR][1000 genomes]
rs832146
0.87[EUR][1000 genomes]
rs832147
0.89[EUR][1000 genomes]
rs832148
0.87[EUR][1000 genomes]
rs832149
0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
LAD1
Distal transcriptional regulation
PHLDA3
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)