SNP Report
Basic Infomation
| Name | rs12787945 dbSNP |
|---|---|
| Location | chr:11,63977546 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231722 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11603042 | 0.80[CHD][hapmap] |
| rs11603192 | 0.80[CHB][hapmap];0.82[CHD][hapmap] |
| rs11603384 | 0.87[CHD][hapmap] |
| rs11603538 | 0.92[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs12362602 | 0.87[EUR][1000 genomes] |
| rs12418535 | 0.80[CHB][hapmap] |
| rs17699798 | 0.86[EUR][1000 genomes] |
| rs1860368 | 0.85[CHD][hapmap];0.83[JPT][hapmap] |
| rs2236647 | 0.96[CEU][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2236648 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2282492 | 0.80[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs2429455 | 0.81[ASW][hapmap];0.83[CHD][hapmap];0.85[LWK][hapmap];0.87[YRI][hapmap] |
| rs2515241 | 0.80[CHB][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2701533 | 0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2845597 | 0.93[ASW][hapmap];0.80[CHB][hapmap];0.90[CHD][hapmap];0.95[LWK][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs2875748 | 0.88[CEU][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs4980508 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[ASN][1000 genomes] |
| rs4980524 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4980525 | 0.85[CEU][hapmap] |
| rs594942 | 0.87[ASW][hapmap];0.87[YRI][hapmap] |
| rs604203 | 0.83[CHD][hapmap] |
| rs60452247 | 0.80[ASN][1000 genomes] |
| rs627055 | 0.81[CEU][hapmap] |
| rs645461 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7112960 | 0.80[CHB][hapmap];0.82[CHD][hapmap] |
| rs7938819 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7948329 | 0.90[EUR][1000 genomes] |
| rs882147 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FERMT3 | Proximal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| FERMT3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014