SNP Report
Basic Infomation
| Name | rs2429455 dbSNP |
|---|---|
| Location | chr:11,63995302 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11601522 | 0.89[EUR][1000 genomes] |
| rs11603042 | 0.84[CEU][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11603192 | 0.84[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap] |
| rs11603384 | 0.92[CEU][hapmap];0.83[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs11603538 | 0.92[CEU][hapmap];0.87[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11604782 | 0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[EUR][1000 genomes] |
| rs12418535 | 0.84[CEU][hapmap];0.87[JPT][hapmap] |
| rs12420070 | 0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12787945 | 0.81[ASW][hapmap];0.83[CHD][hapmap];0.85[LWK][hapmap];0.87[YRI][hapmap] |
| rs1860368 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2236648 | 0.81[ASW][hapmap];0.85[LWK][hapmap];0.88[YRI][hapmap] |
| rs2282492 | 0.85[CHD][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap] |
| rs2515241 | 0.92[CEU][hapmap];0.87[JPT][hapmap];0.87[YRI][hapmap];0.84[EUR][1000 genomes] |
| rs2845597 | 0.87[ASW][hapmap];0.92[CEU][hapmap];0.92[CHD][hapmap];0.87[JPT][hapmap];0.84[LWK][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes] |
| rs3741404 | 0.83[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs3888316 | 0.83[EUR][1000 genomes] |
| rs4980508 | 0.81[CHD][hapmap] |
| rs4980524 | 0.88[YRI][hapmap] |
| rs594942 | 0.93[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs595880 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs604203 | 1.00[CHD][hapmap];0.93[JPT][hapmap] |
| rs60452247 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6591836 | 0.81[EUR][1000 genomes] |
| rs7111753 | 0.82[EUR][1000 genomes] |
| rs7112960 | 0.84[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap] |
| rs882147 | 0.88[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNAJC4 | Proximal transcriptional regulation |
| TRPT1 | Proximal transcriptional regulation |
| NUDT22 | Proximal transcriptional regulation |
| C11orf84 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| NUDT22 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014