SNP Report
Basic Infomation
| Name | rs11603042 dbSNP |
|---|---|
| Location | chr:11,64003843 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1058735 | 0.82[CHB][hapmap] |
| rs1059440 | 0.88[CHB][hapmap] |
| rs11602181 | 0.81[CHB][hapmap] |
| rs11603192 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.83[MEX][hapmap] |
| rs11603212 | 0.88[CHB][hapmap] |
| rs11603384 | 0.88[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.93[YRI][hapmap];0.81[EUR][1000 genomes] |
| rs11604782 | 0.93[YRI][hapmap];0.81[EUR][1000 genomes] |
| rs11605738 | 0.82[CHB][hapmap] |
| rs11607007 | 0.82[CHB][hapmap] |
| rs11607165 | 0.88[CHB][hapmap] |
| rs12418535 | 0.83[CHB][hapmap] |
| rs12575642 | 0.81[CHB][hapmap] |
| rs12787945 | 0.80[CHD][hapmap] |
| rs12794145 | 0.82[CHB][hapmap] |
| rs1860368 | 0.84[CEU][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2001003 | 0.82[CHB][hapmap] |
| rs2015226 | 0.88[CHB][hapmap] |
| rs2070765 | 0.82[CHB][hapmap] |
| rs2282490 | 0.88[CHB][hapmap] |
| rs2282492 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.86[MEX][hapmap] |
| rs2429455 | 0.84[CEU][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2515241 | 0.83[CHB][hapmap] |
| rs2845597 | 0.83[CHB][hapmap];0.90[CHD][hapmap];0.87[MEX][hapmap] |
| rs3741404 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3802933 | 0.88[CHB][hapmap] |
| rs3824854 | 0.81[CHB][hapmap] |
| rs594942 | 0.88[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs595880 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs604203 | 0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.93[LWK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7102327 | 0.88[CHB][hapmap] |
| rs7112960 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.87[MEX][hapmap] |
| rs7939784 | 0.88[CHB][hapmap] |
| rs882146 | 0.88[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FKBP2 | Proximal transcriptional regulation |
| VEGFB | Proximal transcriptional regulation |
| ENSG00000256116 | Proximal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| ENSG00000257069 | Distal transcriptional regulation |
| VEGFB | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014