SNP Report
Basic Infomation
| Name | rs2282492 dbSNP |
|---|---|
| Location | chr:11,63918589 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11601522 | 0.88[ASN][1000 genomes] |
| rs11603042 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.86[MEX][hapmap] |
| rs11603192 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11603384 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11603538 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11604782 | 0.88[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12418535 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12420070 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12787945 | 0.80[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs1860368 | 0.83[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap] |
| rs2236648 | 0.80[CHB][hapmap];0.83[JPT][hapmap] |
| rs2282491 | 0.92[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2429455 | 0.85[CHD][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap] |
| rs2515241 | 0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2701533 | 0.80[ASN][1000 genomes] |
| rs2845597 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3888316 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4980508 | 0.80[CHB][hapmap];0.80[CHD][hapmap];0.83[JPT][hapmap] |
| rs4980524 | 0.80[CHB][hapmap];0.83[JPT][hapmap] |
| rs594942 | 0.94[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap] |
| rs604203 | 0.85[CHD][hapmap] |
| rs60452247 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs614397 | 0.88[YRI][hapmap] |
| rs6591836 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7102177 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7111753 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7112960 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7938819 | 0.80[CHB][hapmap];0.83[JPT][hapmap] |
| rs882147 | 0.80[CHB][hapmap];0.83[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000256824 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014