SNP Report
Basic Infomation
| Name | rs6591836 dbSNP |
|---|---|
| Location | chr:11,63934523 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11601522 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11603192 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11603384 | 0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11603538 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11604782 | 0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12418535 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12420070 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1860368 | 0.82[EUR][1000 genomes] |
| rs2282491 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2282492 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2429455 | 0.81[EUR][1000 genomes] |
| rs2515241 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2845597 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3888316 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs60452247 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7102177 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7111753 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7112960 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MACROD1 | Proximal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| RCOR2 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| SETD9 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| DNAJC4 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| ENSG00000207024 | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| VEGFB | Distal transcriptional regulation |
| ENSG00000269176 | Distal transcriptional regulation |
| TMEM179B | Distal transcriptional regulation |
| ATL3 | Distal transcriptional regulation |
| MARK2 | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014