SNP Report

Basic Infomation

Name	rs7112960 dbSNP
Location	chr:11,63907079
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11601522	0.81[EUR][1000 genomes]
rs11603042	0.83[CHB][hapmap];0.82[CHD][hapmap];0.87[MEX][hapmap]
rs11603192	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11603384	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11603538	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11604782	0.92[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12418535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12420070	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12787945	0.80[CHB][hapmap];0.82[CHD][hapmap]
rs1860368	0.84[CEU][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap]
rs2236648	0.80[CHB][hapmap]
rs2282491	0.88[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2282492	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2429455	0.84[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap]
rs2515241	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2845597	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3888316	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4980508	0.80[CHB][hapmap];0.80[CHD][hapmap]
rs4980524	0.80[CHB][hapmap]
rs594461	0.80[CEU][hapmap]
rs594942	0.94[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap]
rs604203	0.85[CHD][hapmap];0.80[JPT][hapmap]
rs60452247	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs614397	0.88[YRI][hapmap]
rs638227	0.80[CEU][hapmap]
rs640999	0.80[CEU][hapmap]
rs641430	0.80[CEU][hapmap]
rs651855	0.80[CEU][hapmap]
rs6591836	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7102177	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7111753	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7938819	0.80[CHB][hapmap]
rs882147	0.80[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
MACROD1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 5)

eQTL related gene	Source
FKBP2	SCAN
FKBP2	SCAN
PRDX5	SCAN
TRMT112	SCAN
FAU	SCAN