SNP Report
Basic Infomation
| Name | rs4980508 dbSNP |
|---|---|
| Location | chr:11,63941734 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231722 | 0.97[ASN][1000 genomes] |
| rs1123251 | 0.95[GIH][hapmap] |
| rs11603192 | 0.80[CHB][hapmap];0.80[CHD][hapmap] |
| rs11603384 | 0.85[CHD][hapmap] |
| rs12418535 | 0.80[CHB][hapmap] |
| rs12787945 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[ASN][1000 genomes] |
| rs17699798 | 0.82[AFR][1000 genomes] |
| rs1860368 | 0.83[CHD][hapmap];0.83[JPT][hapmap] |
| rs2186643 | 0.86[GIH][hapmap] |
| rs2236647 | 0.93[ASW][hapmap];0.82[CEU][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs2236648 | 1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[ASN][1000 genomes] |
| rs2282492 | 0.80[CHB][hapmap];0.80[CHD][hapmap];0.83[JPT][hapmap] |
| rs2429455 | 0.81[CHD][hapmap] |
| rs2515241 | 0.80[CHB][hapmap] |
| rs2701533 | 0.96[ASN][1000 genomes] |
| rs2845597 | 0.80[CHB][hapmap];0.88[CHD][hapmap] |
| rs2875748 | 0.93[ASW][hapmap];0.98[GIH][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs3751122 | 0.80[YRI][hapmap] |
| rs4980524 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs604203 | 0.81[CHD][hapmap] |
| rs627055 | 0.95[GIH][hapmap] |
| rs645461 | 0.85[ASN][1000 genomes] |
| rs7111753 | 0.80[ASN][1000 genomes] |
| rs7112960 | 0.80[CHB][hapmap];0.80[CHD][hapmap] |
| rs7938819 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs882147 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| STIP1 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014