SNP Report
Basic Infomation
| Name | rs3751122 dbSNP |
|---|---|
| Location | chr:11,63953121 |
| Allele | G/T/A |
LD-proxy of rSNPs(r2>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231699 | 0.86[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap] |
| rs11231721 | 0.89[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11231735 | 0.86[CHD][hapmap];0.91[JPT][hapmap] |
| rs3751117 | 0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs3751120 | 0.81[MEX][hapmap] |
| rs3802932 | 0.92[ASN][1000 genomes] |
| rs4980508 | 0.80[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| STIP1 | Proximal transcriptional regulation |
| KHDRBS1 | Distal transcriptional regulation |
| C17orf76-AS1 | Distal transcriptional regulation |
| NARF | Distal transcriptional regulation |
| ENSG00000265458 | Distal transcriptional regulation |
| RPS16 | Distal transcriptional regulation |
| SUPT5H | Distal transcriptional regulation |
| TIGD1 | Distal transcriptional regulation |
| MIR5001 | Distal transcriptional regulation |
| MYC | Distal transcriptional regulation |
| RNU5F-1 | Distal transcriptional regulation |
| USP1 | Distal transcriptional regulation |
| TRIM45 | Distal transcriptional regulation |
| ANP32E | Distal transcriptional regulation |
| CORO1C | Distal transcriptional regulation |
| ENSG00000258101 | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| TRIM37 | Distal transcriptional regulation |
| ENSG00000224738 | Distal transcriptional regulation |
| RPL18 | Distal transcriptional regulation |
| SPHK2 | Distal transcriptional regulation |
| HAUS8 | Distal transcriptional regulation |
| PPP3R1 | Distal transcriptional regulation |
| OXSM | Distal transcriptional regulation |
| NGLY1 | Distal transcriptional regulation |
| PDCD10 | Distal transcriptional regulation |
| SERPINB1 | Distal transcriptional regulation |
| SRF | Distal transcriptional regulation |
| TRIM26 | Distal transcriptional regulation |
| VCP | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| MARK2 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| CORO7 | Distal transcriptional regulation |
| DNAJA3 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| HIST1H4E | Distal transcriptional regulation |
| MIR21 | Distal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| NAA40 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| TRPT1 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| DNAJC4 | Distal transcriptional regulation |
| ENSG00000256116 | Distal transcriptional regulation |
| VEGFB | Distal transcriptional regulation |
| PDCD4 | Distal transcriptional regulation |
| ENSG00000203497 | Distal transcriptional regulation |
| TPI1 | Distal transcriptional regulation |
| INTS6 | Distal transcriptional regulation |
| MAPK1IP1L | Distal transcriptional regulation |
| ENSG00000259784 | Distal transcriptional regulation |
| ATP6V0C | Distal transcriptional regulation |
| ZNF564 | Distal transcriptional regulation |
| ENSG00000196826 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014