SNP Report
Basic Infomation
| Name | rs3751117 dbSNP |
|---|---|
| Location | chr:11,63920052 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231690 | 1.00[CEU][hapmap] |
| rs11231699 | 0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11231711 | 0.84[AMR][1000 genomes] |
| rs11231721 | 0.80[ASN][1000 genomes] |
| rs11231735 | 1.00[JPT][hapmap];1.00[AFR][1000 genomes] |
| rs11231745 | 0.87[JPT][hapmap] |
| rs2244621 | 0.87[JPT][hapmap] |
| rs2302263 | 0.83[JPT][hapmap] |
| rs34499953 | 0.87[JPT][hapmap] |
| rs35927325 | 0.88[ASN][1000 genomes] |
| rs3751121 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3751122 | 0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs3802932 | 0.80[ASN][1000 genomes] |
| rs4930702 | 0.82[JPT][hapmap] |
| rs953778 | 0.90[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000256824 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014