SNP Report
Basic Infomation
| Name | rs953778 dbSNP |
|---|---|
| Location | chr:11,64066999 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10792429 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs11231699 | 0.85[JPT][hapmap] |
| rs11231735 | 0.91[CHB][hapmap];0.90[JPT][hapmap] |
| rs11231742 | 0.86[ASN][1000 genomes] |
| rs11231745 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11231748 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2244621 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs2302263 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.84[ASN][1000 genomes] |
| rs34499953 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3751117 | 0.90[JPT][hapmap] |
| rs3903175 | 0.89[EUR][1000 genomes] |
| rs4930702 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7107446 | 0.89[EUR][1000 genomes] |
| rs9988817 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9988874 | 0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KCNK4 | Proximal transcriptional regulation |
| TEX40 | Proximal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| VEGFB | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| ENSG00000257086 | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| ENSG00000257069 | RNA binding protein mediated regulation |
| KCNK4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014