SNP Report
Basic Infomation
| Name | rs10792429 dbSNP |
|---|---|
| Location | chr:11,64106727 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231745 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs11231748 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2244621 | 1.00[CEU][hapmap];0.92[TSI][hapmap] |
| rs34499953 | 1.00[CEU][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs3903175 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4930702 | 1.00[CEU][hapmap];0.82[CHD][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7107446 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs953778 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs9988817 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9988874 | 0.87[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCDC88B | Proximal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| ENSG00000236935 | Distal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014