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rVarBase
SNP Report
Basic Infomation
Name
rs9988874  
dbSNP
Location
chr:11,64113402
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10792429
0.87[AMR][1000 genomes]
rs11231745
0.85[ASN][1000 genomes]
rs11231748
0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34499953
0.84[ASN][1000 genomes]
rs3782101
0.81[AFR][1000 genomes]
rs4930702
0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7107446
0.87[AMR][1000 genomes]
rs953778
0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9988817
0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
CCDC88B
Proximal transcriptional regulation
TRMT112
Distal transcriptional regulation
PRDX5
Distal transcriptional regulation
CCDC88B
Distal transcriptional regulation
CCDC88B
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)