SNP Report
Basic Infomation
| Name | rs3782101 dbSNP |
|---|---|
| Location | chr:11,64131280 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231769 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12286894 | 0.92[YRI][hapmap] |
| rs12806363 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4930702 | 0.87[LWK][hapmap] |
| rs6591843 | 0.95[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs685870 | 0.83[CEU][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap] |
| rs9988874 | 0.81[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MIR1237 | Proximal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| ENSG00000257086 | Distal transcriptional regulation |
| MIR1237 | Distal transcriptional regulation |
| RPS6KA4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 14)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014