SNP Report
Basic Infomation
| Name | rs685870 dbSNP |
|---|---|
| Location | chr:11,64111928 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1662185 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2244625 | 0.92[CEU][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap] |
| rs3782101 | 0.83[CEU][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap] |
| rs647152 | 0.82[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCDC88B | Proximal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| MIR1237 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| CCDC88B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 20)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014