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rVarBase
SNP Report
Basic Infomation
Name
rs17699798  
dbSNP
Location
chr:11,63898806
Allele
C/G
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11231722
0.87[EUR][1000 genomes]
rs12362602
0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12787945
0.86[EUR][1000 genomes]
rs2236647
0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2236648
0.87[EUR][1000 genomes]
rs2701533
0.91[EUR][1000 genomes]
rs2875748
0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4980508
0.82[AFR][1000 genomes]
rs4980524
0.87[EUR][1000 genomes]
rs645461
0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7938819
0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7948329
0.93[EUR][1000 genomes]
rs882147
0.87[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
MACROD1
Proximal transcriptional regulation
MACROD1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)