SNP Report
Basic Infomation
| Name | rs2701533 dbSNP |
|---|---|
| Location | chr:11,63930467 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231722 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11603192 | 0.80[ASN][1000 genomes] |
| rs12362602 | 0.92[EUR][1000 genomes] |
| rs12787945 | 0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17699798 | 0.91[EUR][1000 genomes] |
| rs2236647 | 0.90[EUR][1000 genomes] |
| rs2236648 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2282491 | 0.80[ASN][1000 genomes] |
| rs2282492 | 0.80[ASN][1000 genomes] |
| rs2875748 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4980508 | 0.96[ASN][1000 genomes] |
| rs4980524 | 0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs645461 | 0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7938819 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7948329 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs882147 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| STIP1 | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014