SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 20)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897474	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11231704	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11231741	0.84[JPT][hapmap]
rs1123251	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12787945	0.81[CEU][hapmap]
rs1317494	1.00[JPT][hapmap]
rs2186643	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2236647	0.85[CEU][hapmap];0.98[GIH][hapmap]
rs2236648	0.81[CEU][hapmap]
rs2325786	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2325787	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2875748	0.85[CEU][hapmap];0.98[GIH][hapmap]
rs3815362	0.84[JPT][hapmap]
rs4930152	0.84[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap]
rs4980508	0.95[GIH][hapmap]
rs4980524	0.81[CEU][hapmap]
rs4980525	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs55970722	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7938819	0.85[CEU][hapmap]
rs882147	0.81[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000256341	Proximal transcriptional regulation
MACROD1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 7)