SNP Report
Basic Infomation
| Name | rs4930152 dbSNP |
|---|---|
| Location | chr:11,64005412 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231741 | 1.00[ASW][hapmap];0.96[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap] |
| rs11231749 | 0.96[CEU][hapmap] |
| rs1123251 | 0.84[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap];1.00[LWK][hapmap] |
| rs12366035 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1317494 | 0.96[CEU][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2186643 | 0.84[CHB][hapmap];0.82[CHD][hapmap];1.00[LWK][hapmap] |
| rs28395882 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs3815362 | 0.96[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4980525 | 0.84[CHB][hapmap];0.84[JPT][hapmap] |
| rs599908 | 0.83[EUR][1000 genomes] |
| rs627055 | 0.84[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap] |
| rs7125217 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72922019 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs731703 | 1.00[ASW][hapmap];0.96[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap] |
| rs7943988 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs9787810 | 0.96[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FKBP2 | Proximal transcriptional regulation |
| ENSG00000256116 | Proximal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| ENSG00000257069 | Distal transcriptional regulation |
| VEGFB | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014