SNP Report
Basic Infomation
| Name | rs28395882 dbSNP |
|---|---|
| Location | chr:11,64026685 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231741 | 0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11231746 | 0.82[AMR][1000 genomes] |
| rs12366035 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1317494 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3815362 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4930152 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs56057146 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs599908 | 0.96[EUR][1000 genomes] |
| rs7125217 | 0.84[AMR][1000 genomes] |
| rs72922019 | 0.84[AMR][1000 genomes] |
| rs72922077 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72924108 | 0.82[AMR][1000 genomes] |
| rs731703 | 0.82[AMR][1000 genomes] |
| rs7943988 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLCB3 | Proximal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| PLCB3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014